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However, they did find a highly significant association of autism with diet and that an autism diagnosis was associated with less-diverse diet and poorer dietary quality. "The microbiome is strongly affected by the environment, which is why we designed our study with two comparison groups."īased on their analysis, the researchers found limited evidence for a direct association of autism with the microbiome. "We also carefully accounted for diet in all our analyses, along with age and sex," says first author Chloe Yap, an MD-PhD student who works with Gratten. It also provides gene-level information rather than just species-level information, and provides a more accurate representation of microbiome composition than 16S analysis, a technique used in many of the earlier studies linking the microbiome to autism. The investigators analyzed the samples by metagenomic sequencing, which looks at the entire genome of microbial species rather than short genetic barcodes (as with 16S analysis). The subjects included in the analysis were from the Australian Autism Biobank and Queensland Twin Adolescent Brain Project. The samples were collected from 99 children diagnosed with ASD, 51 paired undiagnosed siblings, and 97 unrelated, undiagnosed children. In the Cell study, the investigators analyzed stool samples from a total of 247 children between the ages of 2 and 17. The possibility of targeting the microbiota is a growing area of research for new treatments. The gut-brain axis has been linked not only to ASD but also to anxiety, depression, and schizophrenia. Over the past decade, as next-generation sequencing of the microbial species in the gut has made analysis of the microbiome more automated and less-time consuming, a number of studies have examined the link between particular species of microbes in the gut and mental health. "Our study, which is the largest to date, was designed to overcome some of the limitations of prior work."

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